Re: HELP! My HTTPD website keeps breaking because the custom directory/user permissions are being reverting for some reason!

Oops, forgot to say that it is 6.1 - Release with all patches applied with syspatch.

I need to use the regular /var/www/htdocs for my site

Such a strange issue

Probably (not sure because you didn't care to say which version you're
running) because you upgraded to a newer snapshots. Use another
directory (one that doesn't come in the sets) if you want to do that.