Re: UPDATE: math/R

On 2018/12/21 13:23, Ingo Feinerer wrote:
> Dear useRs,
>
> update math/R 3.5.1 -> 3.5.2
>
> - Bump SO_VERSION minor as check_sym
> (/usr/src/lib/check_sym libR.so.34.1 libR.so.34.2) reports:
>
> No dynamic export changes
> External reference changes:
> added:
> fstat
> pthread_equal
> pthread_kill
> pthread_self
>
> I am not sure it is strictly necessary here but it does not hurt.
>
> - Removed "curses fribidi" from WANTLIB as "make port-lib-depends-check"
> reports them as extra. There are still
>
> R-3.5.2(math/R):
> Extra: c++.2 c++abi.0
>
> but I think these should not be removed?
>
> - The `tan(1+1000i)` test still fails (see
> https://marc.info/?l=openbsd-tech&m=150737856618497&w=2).

Build failed on i386:

....
in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph"
in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
** help
No man pages found in package 'Matrix'
Error in .get_package_metadata(dir, FALSE) :
Files 'DESCRIPTION' and 'DESCRIPTION.in' are missing.
ERROR: installing Rd objects failed for package 'Matrix'
* removing '/usr/obj/ports/R-3.5.2/build-i386/library/Matrix'
gmake[2]: Leaving directory '/usr/obj/ports/R-3.5.2/build-i386/src/library/Recommended'
gmake[1]: Leaving directory '/usr/obj/ports/R-3.5.2/build-i386/src/library/Recommended'
===> Exiting math/R with an error
gmake[2]: *** [Makefile:53: Matrix.ts] Error 1
gmake[1]: *** [Makefile:39: recommended-packages] Error 2
gmake: *** [Makefile:77: stamp-recommended] Error 2
*** Error 2 in math/R (/usr/ports/infrastructure/mk/bsd.port.mk:2786 '/usr/obj/ports/R-3.5.2/build-i386/.build_done')

Full log attached.