Re: UPDATE: math/R

On Tue, Dec 25, 2018 at 11:52:01PM +0000, Stuart Henderson wrote:
> Build failed on i386:
>
> ....
> in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL"
> in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
> in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph"
> in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL"
> in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
> Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
> Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
> Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
> Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
> Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
> Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
> Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
> Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
> ** help
> No man pages found in package 'Matrix'
> Error in .get_package_metadata(dir, FALSE) :
> Files 'DESCRIPTION' and 'DESCRIPTION.in' are missing.
> ERROR: installing Rd objects failed for package 'Matrix'
> * removing '/usr/obj/ports/R-3.5.2/build-i386/library/Matrix'
> gmake[2]: Leaving directory '/usr/obj/ports/R-3.5.2/build-i386/src/library/Recommended'
> gmake[1]: Leaving directory '/usr/obj/ports/R-3.5.2/build-i386/src/library/Recommended'
> ===> Exiting math/R with an error
> gmake[2]: *** [Makefile:53: Matrix.ts] Error 1
> gmake[1]: *** [Makefile:39: recommended-packages] Error 2
> gmake: *** [Makefile:77: stamp-recommended] Error 2
> *** Error 2 in math/R (/usr/ports/infrastructure/mk/bsd.port.mk:2786 '/usr/obj/ports/R-3.5.2/build-i386/.build_done')

I cannot reproduce this
(tested with a current i386 snapshot in vmm:
$ sysctl kern.version
kern.version=OpenBSD 6.4-current (GENERIC) #1078: Mon Dec 24 22:34:36 MST 2018
deraadt@i386.openbsd.org:/usr/src/sys/arch/i386/compile/GENERIC
)

> ...
> Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
> Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
> Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
> ** help
> *** installing help indices
> ** building package indices
> Loading required package: Matrix
> ** installing vignettes
> ** testing if installed package can be loaded
> * DONE (Matrix)

Maybe lacking free space or another problem when extracting the Matrix
.tar.gz on the build machine?

Best regards,
Ingo